Genome browser

All genes and genomic intervals are tiled together, genes are always from 5' to 3' end, relative to their strands. Track data of each gene are summarized into fixed length vectors, and median value over each data point is plotted.

Line width 12345 box colorimage width 300400500600700800900100011001200130014001500height 300400500600700800
other curves use lighter colorwhisker range entire span (min to max)1.5x of box spanoutlier hideshowabout these options
plot average values

One line is plotted for each gene or item, genes are always from 5' to 3', relative to their strands. Track data of each gene and item are summarized into equal length vectors.

Line width 12345 line colorimage width 300400500600700800900100011001200130014001500 height 300400500600700800

Profiles of gene parts (3 kb promoter, 5' UTR, exons, introns, 3' UTR) will be plotted as separate curves, in the same fashion as first plot type (only applies to genes, genomic coordinates will be skipped)

Run hierarchical or K-means clustering analysis on genes, and explore result through its interactive features.

distance metric euclideanpearsonspearman agglomeration single linkagecomplete linkageaverage linkagenumber of clusters 2345678910

Row height 12345678910 plot width of data points 12345
use global min/max positive valuenegative value(white for zero baseline)